MolNFT v1 · #2395 · protein
Manganese binding mutant in cytochrome C peroxidase
1BVA · Protein (cytochrome C peroxidase): “Manganese binding mutant in cytochrome C peroxidase”. X-ray diffraction, 2 ligands (HEM, MN), 2 pockets (best druggability 0.78). MolNFT v1 #2395 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1BVA
- Type
- protein
- Length
- 291 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (cytochrome C peroxidase)
- EC
- 1.11.1.5
- UniProt
- P00431
- Ligands
- HEM, MN
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (cytochrome C peroxidase) (EC 1.11.1.5) | protein | 291 | 50% helix, 8% strand | P00431 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 373 | 0.78 | 0.88 | 49 | MN, HEM |
| 2 | 61 | 0.31 | 0.75 | 16 | empty |
Compared structures
- 1BVA · Manganese binding mutant in cytochrome C peroxidase · the same entry in another collection · chain A against A, TM-score 1.00
- P00431 · AlphaFold monomer V2.0 prediction for cytochrome C peroxidase, mitochondrial (P00431) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00431
- Elsewhere: RCSB PDB 1BVA · PDBe 1BVA · UniProt P00431
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