MolNFT v1 · #23886 · protein
Crystal structure of the hyperthermophilic archaeal DNA-binding protein SSO10B2 at 1.85 a
1UDV · DNA binding protein SSO10B: “Crystal structure of the hyperthermophilic archaeal DNA-binding protein SSO10B2 at 1.85 a”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #23886 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1UDV
- Type
- protein
- Length
- 174 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA binding protein SSO10B
- UniProt
- Q97ZF4
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA binding protein SSO10B | protein | 88 | 36% helix, 35% strand | Q97ZF4 |
| B | DNA binding protein SSO10B | protein | 86 | 37% helix, 36% strand | Q97ZF4 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 671 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 1UDV · Crystal structure of the hyperthermophilic archaeal dna-binding protein Sso10b2 at 1.85 A · the same entry in another collection · chain A against A, TM-score 1.00
- Q97ZF4 · AlphaFold monomer V2.0 prediction for DNA/RNA-binding protein alba 2 (Q97ZF4) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97ZF4
- Elsewhere: RCSB PDB 1UDV · PDBe 1UDV · UniProt Q97ZF4
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