MolNFT v1 · #23881 · protein
Crystal structure of the tRNA processing enzyme RNase pH T125A mutant from aquifex aeolicus
1UDQ · Ribonuclease pH: “Crystal structure of the tRNA processing enzyme RNase pH T125A mutant from aquifex aeolicus”. X-ray diffraction, 2 ligands (SO4, PO4), 1 pocket (best druggability 0.54). MolNFT v1 #23881 on GenesisL1: 3D structure…
- PDB
- 1UDQ
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease pH
- EC
- 2.7.7.56
- UniProt
- O67069
- Ligands
- SO4, PO4
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease pH (EC 2.7.7.56) | protein | 254 | 28% helix, 33% strand | O67069 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.54 | 0.79 | 26 | PO4 |
Compared structures
- 1UDQ · Crystal structure of the tRNA processing enzyme RNase PH T125A mutant from Aquifex… · the same entry in another collection · chain A against A, TM-score 1.00
- O67069 · AlphaFold monomer V2.0 prediction for ribonuclease pH (O67069) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67069
- Elsewhere: RCSB PDB 1UDQ · PDBe 1UDQ · UniProt O67069
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