MolNFT v1 · #23874 · protein
The structural basis of specific base excision repair by uracil-DNA glycosylase
1UDH: “The structural basis of specific base excision repair by uracil-DNA glycosylase”. X-ray diffraction, 2 ligands (URA, SO4), 1 pocket (best druggability 0.50). MolNFT v1 #23874 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1UDH
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uracil-DNA glycosylase
- EC
- 3.2.2.3
- UniProt
- P10186
- Ligands
- URA, SO4
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uracil-DNA glycosylase (EC 3.2.2.3) | protein | 228 | 43% helix, 11% strand | P10186 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 139 | 0.50 | 0.79 | 33 | SO4, URA |
Compared structures
- 1UDH · The structural basis of specific base excision repair by uracil-DNA glycosylase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10186
- Elsewhere: RCSB PDB 1UDH · PDBe 1UDH · UniProt P10186
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