MolNFT v1 · #23864 · protein

Crystal structure of AMYK38 with potassium ion

1UD6 · Amylase: “Crystal structure of AMYK38 with potassium ion”. X-ray diffraction, 1 ligand (K), 4 pockets (best druggability 0.51). MolNFT v1 #23864 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1UD6
Type: protein
Length: 480 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Amylase
EC: 3.2.1.1
UniProt: Q93I48
Ligands: K
Pockets: 4 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Amylase (EC 3.2.1.1)	protein	480	27% helix, 26% strand	Q93I48

Ligands and binding sites

K · Potassium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	161	0.51	0.79	24	empty
2	58	0.35	0.78	19	empty
3	73	0.34	0.76	13	empty
4	50	0.24	0.73	24	empty

Compared structures

1UD6 · Crystal structure of AmyK38 with potassium ion · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q93I48
Elsewhere: RCSB PDB 1UD6 · PDBe 1UD6 · UniProt Q93I48

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