MolNFT v1 · #23771 · protein
Crystal structure of hyhel-10 fv mutant sfsf complexed with turkey white lysozyme
1UAC · Lysozyme binding ig kappa chain V23-J2 region: “Crystal structure of hyhel-10 fv mutant sfsf complexed with turkey white lysozyme”. X-ray diffraction, 4 pockets (best druggability 0.45). MolNFT v1 #23771 on GenesisL1: 3D structure…
- PDB
- 1UAC
- Type
- protein
- Length
- 350 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme binding ig kappa chain V23-J2 region; Ig VH,ANTI-lysozyme; Lysozyme C
- EC
- 3.2.1.17
- UniProt
- P00703
- Pockets
- 4 · best druggability 0.45
Structure
x-ray diffraction · 3 distinct chains · 19% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | Lysozyme binding ig kappa chain V23-J2 region | protein | 107 | 0% helix, 50% strand | — |
| H | Ig VH,ANTI-lysozyme | protein | 114 | 11% helix, 51% strand | — |
| Y | Lysozyme C (EC 3.2.1.17) | protein | 129 | 41% helix, 11% strand | P00703 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.45 | 0.78 | 20 | empty |
| 2 | 137 | 0.44 | 0.76 | 22 | empty |
| 3 | 74 | 0.32 | 0.75 | 18 | empty |
| 4 | 68 | 0.28 | 0.73 | 16 | empty |
Interfaces
3 interfaces between chains.
- L–H · 806 Ų buried · 5 hydrogen bonds · protein-protein
- H–Y · 508 Ų buried · 7 hydrogen bonds · protein-protein
- L–Y · 401 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 1UAC · Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME · the same entry in another collection · chain L against L, TM-score 1.00
- P00703 · AlphaFold monomer V2.0 prediction for lysozyme C (P00703) · a predicted model of the same protein · chain Y against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00703
- Elsewhere: RCSB PDB 1UAC · PDBe 1UAC · UniProt P00703
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