MolNFT v1 · #23752 · RNA

Crystal structure of the specificity domain of ribonuclease P of the a-type

1U9S: “Crystal structure of the specificity domain of ribonuclease P of the a-type”. X-ray diffraction, 1 ligand (BA), 5 pockets (best druggability 0.67). MolNFT v1 #23752 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1U9S
Type: RNA
Length: 155 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribonuclease P
Ligands: BA
Pockets: 5 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribonuclease P	rna	155	—	—

Ligands and binding sites

BA · Barium ion · metal · 21 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	757	0.67	0.76	47	BA
2	372	0.52	0.74	25	BA
3	219	0.48	0.76	16	BA
4	234	0.45	0.74	17	BA
5	213	0.44	0.74	17	BA

Compared structures

1U9S · Crystal structure of the specificity domain of Ribonuclease P of the A-type · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1U9S · PDBe 1U9S

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