MolNFT v1 · #23744 · protein

Crystal structure of mouse triggering receptor expressed on myeloid cells 1 (trem-1) at 1.76

1U9K: “Crystal structure of mouse triggering receptor expressed on myeloid cells 1 (trem-1) at 1.76”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #23744 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1U9K
Type: protein
Length: 220 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Triggering receptor expressed on myeloid cells 1
UniProt: Q9JKE2
Ligands: ZN

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Triggering receptor expressed on myeloid cells 1	protein	110	9% helix, 49% strand	Q9JKE2

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 336 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1U9K · Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (TREM-1) at… · the same entry in another collection · chain A against A, TM-score 1.00
Q9JKE2 · AlphaFold monomer V2.0 prediction for triggering receptor expressed on myeloid cells 1… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9JKE2
Elsewhere: RCSB PDB 1U9K · PDBe 1U9K · UniProt Q9JKE2

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