MolNFT v1 · #23641 · protein

Vinculin head (0-258) in complex with the talin vinculin binding site 2 (849-879)

1U6H: “Vinculin head (0-258) in complex with the talin vinculin binding site 2 (849-879)”. X-ray diffraction, 2 pockets (best druggability 0.52). MolNFT v1 #23641 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1U6H
Type: protein
Length: 276 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Vinculin; Talin
UniProt: P12003, Q8AWI0
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 2 distinct chains · 80% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Vinculin	protein	252	80% helix, 1% strand	P12003
B	Talin	protein	24	79% helix, 0% strand	Q8AWI0

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.52	0.79	19	empty
2	53	0.27	0.74	17	empty

Interfaces

1 interface between chains.

A–B · 1196 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

1U6H · Vinculin head (0-258) in complex with the talin vinculin binding site 2 (849-879) · the same entry in another collection · chain A against A, TM-score 1.00
P12003 · AlphaFold monomer V2.0 prediction for vinculin (P12003) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12003
Every structure of UniProt Q8AWI0
Elsewhere: RCSB PDB 1U6H · PDBe 1U6H · UniProt P12003 · UniProt Q8AWI0

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