MolNFT v1 · #2363 · protein
Rat pancreatic lipase related protein 2
1BU8 · Protein (pancreatic lipase related protein 2): “Rat pancreatic lipase related protein 2”. X-ray diffraction, 1 ligand (NAG), 4 pockets (best druggability 0.39). MolNFT v1 #2363 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1BU8
- Type
- protein
- Length
- 446 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (pancreatic lipase related protein 2)
- EC
- 3.1.1.3
- UniProt
- P54318
- Ligands
- NAG
- Pockets
- 4 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (pancreatic lipase related protein 2) (EC 3.1.1.3) | protein | 446 | 24% helix, 30% strand | P54318 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.39 | 0.78 | 16 | empty |
| 2 | 67 | 0.39 | 0.79 | 14 | empty |
| 3 | 60 | 0.37 | 0.79 | 17 | empty |
| 4 | 55 | 0.36 | 0.79 | 15 | empty |
Modifications
Observed in the structure: 6 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54318
- Elsewhere: RCSB PDB 1BU8 · PDBe 1BU8 · UniProt P54318
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