MolNFT v1 · #23570 · protein

Ispf with 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate

1U43 · 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: “Ispf with 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate”. X-ray diffraction, 1 ligand (SUD), 1 pocket (best druggability 0.39). MolNFT v1 #23570 on GenesisL1: 3D…

PDB: 1U43
Type: protein
Length: 155 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
EC: 4.6.1.12
UniProt: P62617
Ligands: SUD
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	protein	155	37% helix, 31% strand	P62617

Ligands and binding sites

SUD · 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.39	0.78	17	SUD

Compared structures

1U43 · IspF with 4-diphosphocytidyl-2c-methyl-D-erythritol 2-phosphate · the same entry in another collection · chain A against A, TM-score 1.00
P62617 · AlphaFold monomer V2.0 prediction for 2-C-methyl-D-erythritol 2,4-cyclodiphosphate… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P62617
Elsewhere: RCSB PDB 1U43 · PDBe 1U43 · UniProt P62617

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