MolNFT v1 · #23469 · protein
Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate
1U16 · Delta crystallin I: “Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate”. X-ray diffraction, 2 ligands (CL, SO4), 2 pockets (best druggability 0.34). MolNFT v1 #23469 on GenesisL1: 3D…
- PDB
- 1U16
- Type
- protein
- Length
- 449 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Delta crystallin I
- EC
- 4.3.2.1
- UniProt
- P24057
- Ligands
- CL, SO4
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 69% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Delta crystallin I (EC 4.3.2.1) | protein | 449 | 69% helix, 5% strand | P24057 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains A
- SO4 · Sulfate ion · ion · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.34 | 0.74 | 18 | empty |
| 2 | 68 | 0.32 | 0.75 | 11 | empty |
Compared structures
- 1U16 · Crystal structure of a duck-delta-crystallin-1 double loop mutant (DLM) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P24057 · AlphaFold monomer V2.0 prediction for delta-1 crystallin (P24057) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24057
- Elsewhere: RCSB PDB 1U16 · PDBe 1U16 · UniProt P24057
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