MolNFT v1 · #23431 · protein
Crystal structure of trehalose-6-phosphate phosphatase related protein
1U02: “Crystal structure of trehalose-6-phosphate phosphatase related protein”. X-ray diffraction, 2 ligands (NA, MG), 1 pocket (best druggability 0.74). MolNFT v1 #23431 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1U02
- Type
- protein
- Length
- 229 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trehalose-6-phosphate phosphatase related protein
- UniProt
- Q9HIW7
- Ligands
- NA, MG
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trehalose-6-phosphate phosphatase related protein | protein | 229 | 41% helix, 24% strand | Q9HIW7 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 288 | 0.74 | 0.87 | 31 | NA, GOL |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 1U02 · Crystal structure of trehalose-6-phosphate phosphatase related protein · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HIW7 · AlphaFold monomer V2.0 prediction for trehalose-6-phosphate phosphatase-related protein… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HIW7
- Elsewhere: RCSB PDB 1U02 · PDBe 1U02 · UniProt Q9HIW7
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