MolNFT v1 · #23428 · protein
Crystal structure of the protein L1841, unknown member of enolase superfamily from bradyrhizobium japonicum
1TZZ · Hypothetical protein L1841: “Crystal structure of the protein L1841, unknown member of enolase superfamily from bradyrhizobium japonicum”. X-ray diffraction, 1 ligand (MG), 7 pockets (best druggability 0.62). MolNFT v1 #23428 on…
- PDB
- 1TZZ
- Type
- protein
- Length
- 753 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein L1841
- UniProt
- Q89FH0
- Ligands
- MG
- Pockets
- 7 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein L1841 | protein | 374 | 39% helix, 18% strand | Q89FH0 |
| B | Hypothetical protein L1841 | protein | 379 | 40% helix, 18% strand | Q89FH0 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.62 | 0.83 | 36 | empty |
| 2 | 138 | 0.50 | 0.79 | 25 | empty |
| 3 | 123 | 0.47 | 0.78 | 24 | empty |
| 4 | 89 | 0.43 | 0.79 | 14 | empty |
| 5 | 108 | 0.42 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 394 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 1TZZ · Crystal structure of the protein L1841, unknown member of enolase superfamily from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q89FH0 · AlphaFold monomer V2.0 prediction for D(-)-tartrate dehydratase (Q89FH0) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q89FH0
- Elsewhere: RCSB PDB 1TZZ · PDBe 1TZZ · UniProt Q89FH0
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