MolNFT v1 · #23340 · protein
Gpd prior to capsid assembly
1TX9 · Scaffolding protein D: “Gpd prior to capsid assembly”. X-ray diffraction, 2 pockets (best druggability 0.38). MolNFT v1 #23340 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1TX9
- Type
- protein
- Length
- 271 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scaffolding protein D
- UniProt
- P03637
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 58% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scaffolding protein D | protein | 141 | 60% helix, 1% strand | P03637 |
| B | Scaffolding protein D | protein | 130 | 55% helix, 0% strand | P03637 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.38 | 0.75 | 24 | empty |
| 2 | 84 | 0.34 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1225 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 1TX9 · gpd prior to capsid assembly · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03637
- Elsewhere: RCSB PDB 1TX9 · PDBe 1TX9 · UniProt P03637
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