MolNFT v1 · #23278 · protein

Variable domain of T cell receptor delta chain

1TVD: “Variable domain of T cell receptor delta chain”. X-ray diffraction, 3 pockets (best druggability 0.45). MolNFT v1 #23278 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1TVD
Type: protein
Length: 232 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T cell receptor
Pockets: 3 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	T cell receptor	protein	116	8% helix, 50% strand	—

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	127	0.45	0.77	24	empty
2	119	0.45	0.78	28	empty
3	99	0.35	0.74	19	empty

Interfaces

1 interface between chains.

A–B · 867 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1TVD · Variable domain of T cell receptor delta chain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1TVD · PDBe 1TVD

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.