MolNFT v1 · #2325 · protein
Catechol oxidase from ipomoea batatas (sweet potatoes) in the native CU(II)-CU(II) state
1BT3 · Protein (catechol oxidase): “Catechol oxidase from ipomoea batatas (sweet potatoes) in the native CU(II)-CU(II) state”. X-ray diffraction, 1 ligand (C2O), 2 pockets (best druggability 0.36). MolNFT v1 #2325 on GenesisL1: 3D…
- PDB
- 1BT3
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (catechol oxidase)
- EC
- 1.10.3.1
- UniProt
- Q9ZP19
- Ligands
- C2O
- Pockets
- 2 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (catechol oxidase) (EC 1.10.3.1) | protein | 336 | 39% helix, 8% strand | Q9ZP19 |
Ligands and binding sites
- C2O · Cu-O-Cu linkage · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.36 | 0.79 | 18 | empty |
| 2 | 85 | 0.35 | 0.75 | 14 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1BT3 · Catechol oxidase from ipomoea batatas (sweet potatoes) in the native CU(II)-CU(II) state · the same entry in another collection · chain A against A, TM-score 1.00
- Q9ZP19 · AlphaFold monomer V2.0 prediction for polyphenol oxidase I, chloroplastic (Q9ZP19) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZP19
- Elsewhere: RCSB PDB 1BT3 · PDBe 1BT3 · UniProt Q9ZP19
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