MolNFT v1 · #23233 · protein
The complex of nostoc cytochrome F and plastocyanin determin with paramagnetic NMR. based on the structures of cytochrome F and plastocyanin, 10 structures
1TU2: “The complex of nostoc cytochrome F and plastocyanin determin with paramagnetic NMR. based on the structures…”. Solution nmr, 2 ligands (HEC, CU), 3 pockets (best druggability 0.76). MolNFT v1 #23233 on GenesisL1: 3D structure…
- PDB
- 1TU2
- Type
- protein
- Length
- 359 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plastocyanin; Apocytochrome F
- UniProt
- P46444, Q93SW9
- Ligands
- HEC, CU
- Pockets
- 3 · best druggability 0.76
Structure
solution nmr · 2 distinct chains · 9% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Plastocyanin | protein | 105 | 6% helix, 23% strand | P46444 |
| B | Apocytochrome F | protein | 254 | 11% helix, 38% strand | Q93SW9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 563 | 0.76 | 0.83 | 65 | HEC |
| 2 | 78 | 0.31 | 0.73 | 15 | empty |
| 3 | 54 | 0.27 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 423 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 1TU2 · The complex of nostoc cytochrome F and plastocyanin determin with paramagnetic NMR. based… · the same entry in another collection · chain B against B, TM-score 1.00
- Q93SW9 · AlphaFold monomer V2.0 prediction for cytochrome F (Q93SW9) · a predicted model of the same protein · chain B against A, TM-score 0.97
- P46444 · AlphaFold monomer V2.0 prediction for plastocyanin (P46444) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46444
- Every structure of UniProt Q93SW9
- Elsewhere: RCSB PDB 1TU2 · PDBe 1TU2 · UniProt P46444 · UniProt Q93SW9
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