MolNFT v1 · #23137 · protein

Crystal structure of a boiling stable protein SP1

1TR0 · Stable protein 1: “Crystal structure of a boiling stable protein SP1”. X-ray diffraction, 20 pockets (best druggability 0.65). MolNFT v1 #23137 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1TR0
Type: protein
Length: 2,544 residues
Chains: 24
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Stable protein 1
UniProt: Q9AR79
Pockets: 20 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y	Stable protein 1	protein	106	36% helix, 30% strand	Q9AR79

Ligands and binding sites

GOL · Glycerol · additive · 24 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	579	0.65	0.76	95	empty
2	549	0.65	0.76	93	empty
3	543	0.62	0.75	78	empty
4	347	0.58	0.76	66	empty
5	88	0.55	0.85	15	GOL

Interfaces

63 interfaces between chains.

K–L · 1672 Å² buried · 34 hydrogen bonds · protein-protein
V–W · 1666 Å² buried · 33 hydrogen bonds · protein-protein
C–D · 1664 Å² buried · 32 hydrogen bonds · protein-protein
M–N · 1664 Å² buried · 34 hydrogen bonds · protein-protein
A–B · 1663 Å² buried · 33 hydrogen bonds · protein-protein

Compared structures

1TR0 · Crystal Structure of a boiling stable protein SP1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9AR79
Elsewhere: RCSB PDB 1TR0 · PDBe 1TR0 · UniProt Q9AR79

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