MolNFT v1 · #23108 · protein

Crystal structure of yhhw from escherichia COLI

1TQ5 · Protein yhhw: “Crystal structure of yhhw from escherichia COLI”. X-ray diffraction, 1 ligand (CD), 1 pocket (best druggability 0.46). MolNFT v1 #23108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1TQ5
Type: protein
Length: 234 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein yhhw
UniProt: P46852
Ligands: CD
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein yhhw	protein	234	3% helix, 55% strand	P46852

Ligands and binding sites

CD · Cadmium ion · metal · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.46	0.79	18	CD

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

1TQ5 · Crystal Structure of YhhW from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
P46852 · AlphaFold monomer V2.0 prediction for quercetin 2,3-dioxygenase (P46852) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P46852
Elsewhere: RCSB PDB 1TQ5 · PDBe 1TQ5 · UniProt P46852

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