MolNFT v1 · #22978 · protein
Crystal structure of the apo form of the salmonella typhimurium ai-2 receptor lsrb
1TM2 · Sugar transport protein: “Crystal structure of the apo form of the salmonella typhimurium ai-2 receptor lsrb”. X-ray diffraction, 2 pockets (best druggability 0.68). MolNFT v1 #22978 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1TM2
- Type
- protein
- Length
- 314 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sugar transport protein
- UniProt
- Q8Z2X8
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sugar transport protein | protein | 314 | 42% helix, 20% strand | Q8Z2X8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 442 | 0.68 | 0.79 | 43 | empty |
| 2 | 51 | 0.30 | 0.76 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1TM2 · Crystal Structure of the apo form of the Salmonella typhimurium AI-2 receptor LsrB · the same entry in another collection · chain A against A, TM-score 1.00
- Q8Z2X8 · AlphaFold monomer V2.0 prediction for autoinducer 2-binding protein lsrb (Q8Z2X8) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Z2X8
- Elsewhere: RCSB PDB 1TM2 · PDBe 1TM2 · UniProt Q8Z2X8
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