MolNFT v1 · #22878 · protein

X-ray structure of the sucrose-phosphatase (spp) from synechocystis sp. PCC6803 in complex with sucrose and phosphate

1TJ5: “X-ray structure of the sucrose-phosphatase (spp) from synechocystis sp. PCC6803 in complex with sucrose and…”. X-ray diffraction, 4 ligands (GLC, FRU, MG), 2 pockets (best druggability 0.47). MolNFT v1 #22878 on GenesisL1: 3D…

PDB: 1TJ5
Type: protein
Length: 244 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sucrose-phosphatase
EC: 3.1.3.24
UniProt: P74325
Ligands: GLC, FRU, MG, PO4
Pockets: 2 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sucrose-phosphatase (EC 3.1.3.24)	protein	244	42% helix, 23% strand	P74325

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · chains A
FRU · beta-D-fructofuranose · sugar · chains A
MG · Magnesium ion · metal · 2 copies · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.47	0.78	24	GLC, FRU, PO4, MG
2	112	0.37	0.74	21	empty

Compared structures

1TJ5 · X-Ray structure of the Sucrose-Phosphatase (SPP) from Synechocystis sp. PCC6803 in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P74325
Elsewhere: RCSB PDB 1TJ5 · PDBe 1TJ5 · UniProt P74325

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