MolNFT v1 · #22771 · protein

RNase H from bacteriophage T4

1TFR · T4 RNase H: “RNase H from bacteriophage T4”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.55). MolNFT v1 #22771 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1TFR
Type: protein
Length: 283 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T4 RNase H
EC: 3.1.26.4
UniProt: P13319
Ligands: MG
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	T4 RNase H (EC 3.1.26.4)	protein	283	55% helix, 11% strand	P13319

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	256	0.55	0.77	45	MG
2	87	0.43	0.79	24	empty

Compared structures

1TFR · RNase H from bacteriophage T4 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13319
Elsewhere: RCSB PDB 1TFR · PDBe 1TFR · UniProt P13319

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