MolNFT v1 · #22684 · protein

Crystal structure of a truncated version of the phage lamda protein gpd

1TCZ · Head decoration protein: “Crystal structure of a truncated version of the phage lamda protein gpd”. X-ray diffraction, 5 pockets (best druggability 0.73). MolNFT v1 #22684 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1TCZ
Type: protein
Length: 570 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Head decoration protein
UniProt: P03712
Pockets: 5 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F	Head decoration protein	protein	95	5% helix, 33% strand	P03712

Pockets

5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	874	0.73	0.77	80	empty
2	98	0.68	0.91	21	empty
3	109	0.64	0.88	21	empty
4	408	0.60	0.76	47	empty
5	373	0.58	0.76	44	empty

Interfaces

10 interfaces between chains.

A–C · 650 Å² buried · 6 hydrogen bonds · protein-protein
D–F · 650 Å² buried · 7 hydrogen bonds · protein-protein
E–F · 649 Å² buried · 6 hydrogen bonds · protein-protein
B–C · 643 Å² buried · 6 hydrogen bonds · protein-protein
A–B · 642 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

1TCZ · Crystal structure of a truncated version of the phage lamda protein gpD · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03712
Elsewhere: RCSB PDB 1TCZ · PDBe 1TCZ · UniProt P03712

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