MolNFT v1 · #22663 · protein
Crystal structure of krait-venom phospholipase A2 in a complex with a natural fatty acid tridecanoic acid
1TC8 · Phospholipase A2 isoform 1: “Crystal structure of krait-venom phospholipase A2 in a complex with a natural fatty acid tridecanoic acid”. X-ray diffraction, 2 ligands (TDA, NA), 1 pocket (best druggability 0.53). MolNFT v1 #22663 on…
- PDB
- 1TC8
- Type
- protein
- Length
- 118 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2 isoform 1
- EC
- 3.1.1.4
- UniProt
- Q6SLM2
- Ligands
- TDA, NA
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2 isoform 1 (EC 3.1.1.4) | protein | 118 | 42% helix, 8% strand | Q6SLM2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.53 | 0.79 | 24 | TDA |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 1TC8 · Crystal structure of Krait-venom phospholipase A2 in a complex with a natural fatty acid… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6SLM2 · AlphaFold monomer V2.0 prediction for acidic phospholipase A2 1 (Q6SLM2) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6SLM2
- Elsewhere: RCSB PDB 1TC8 · PDBe 1TC8 · UniProt Q6SLM2
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