MolNFT v1 · #22548 · protein

1.8 a crystal structure of an uncharacterized B. stearothermophilus protein

1T8H · Ylmd protein sequence homologue: “1.8 a crystal structure of an uncharacterized B. stearothermophilus protein”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.48). MolNFT v1 #22548 on GenesisL1: 3D structure…

PDB: 1T8H
Type: protein
Length: 272 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ylmd protein sequence homologue
UniProt: P84138
Ligands: ZN
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ylmd protein sequence homologue	protein	272	27% helix, 25% strand	P84138

Ligands and binding sites

ZN · Zinc ion · metal · chains A
BME · Beta-mercaptoethanol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.48	0.78	18	BME

Modifications

Observed in the structure: 2 covalent (additive adduct).

Compared structures

1T8H · 1.8 a crystal structure of an uncharacterized B. stearothermophilus protein · the same entry in another collection · chain A against A, TM-score 1.00
P84138 · AlphaFold monomer V2.0 prediction for purine nucleoside phosphorylase ylmd (P84138) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P84138
Elsewhere: RCSB PDB 1T8H · PDBe 1T8H · UniProt P84138

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.