MolNFT v1 · #22481 · protein
Nickel superoxide dismutase (nisod) apo structure
1T6I · Superoxide dismutase [ni]: “Nickel superoxide dismutase (nisod) apo structure”. X-ray diffraction, 1 pocket (best druggability 0.40). MolNFT v1 #22481 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1T6I
- Type
- protein
- Length
- 330 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superoxide dismutase [ni]
- EC
- 1.15.1.1
- UniProt
- P80735
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 3 distinct chains · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Superoxide dismutase [ni] (EC 1.15.1.1) | protein | 111 | 83% helix, 0% strand | P80735 |
| B | Superoxide dismutase [ni] (EC 1.15.1.1) | protein | 110 | 82% helix, 0% strand | P80735 |
| C | Superoxide dismutase [ni] (EC 1.15.1.1) | protein | 109 | 81% helix, 0% strand | P80735 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.40 | 0.77 | 23 | empty |
Interfaces
3 interfaces between chains.
- A–C · 369 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 340 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 336 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80735
- Elsewhere: RCSB PDB 1T6I · PDBe 1T6I · UniProt P80735
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