MolNFT v1 · #22272 · RNA
Crystal structure of 2-aminopurine labelled bacterial decoding site RNA
1T0E · 5'- R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*CP*GP*G)…: “Crystal structure of 2-aminopurine labelled bacterial decoding site RNA”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.42). MolNFT v1 #22272 on…
- PDB
- 1T0E
- Type
- RNA
- Length
- 35 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'- R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*CP*GP*G)- 3'; 5'…
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'- R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*CP*GP*G)- 3' | rna | 18 | — | — |
| C | 5'- R(*CP*GP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3' | rna | 17 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.42 | 0.72 | 22 | SO4 |
Interfaces
1 interface between chains.
- A–C · 855 Ų buried · 78 hydrogen bonds · nucleic-nucleic
Compared structures
- 1T0E · Crystal Structure of 2-aminopurine labelled bacterial decoding site RNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1T0E · PDBe 1T0E
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