MolNFT v1 · #22222 · protein
Crystal structure of the R2 subunit of ribonucleotide reductase from chlamydia trachomatis
1SYY · Ribonucleoside-diphosphate reductase beta chain: “Crystal structure of the R2 subunit of ribonucleotide reductase from chlamydia trachomatis”. X-ray diffraction, 2 ligands (FE, PB), 1 pocket (best druggability 0.34). MolNFT v1…
- PDB
- 1SYY
- Type
- protein
- Length
- 317 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonucleoside-diphosphate reductase beta chain
- EC
- 1.17.4.1
- UniProt
- O84835
- Ligands
- FE, PB
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1) | protein | 317 | 72% helix, 1% strand | O84835 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.34 | 0.77 | 12 | empty |
Compared structures
- 1SYY · Crystal structure of the R2 subunit of ribonucleotide reductase from Chlamydia trachomatis · the same entry in another collection · chain A against A, TM-score 1.00
- O84835 · AlphaFold monomer V2.0 prediction for ribonucleoside-diphosphate reductase subunit beta… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O84835
- Elsewhere: RCSB PDB 1SYY · PDBe 1SYY · UniProt O84835
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