MolNFT v1 · #22101 · protein
Envelope glycoprotein from tick-borne encephalitis virus
1SVB · Tick-borne encephalitis virus glycoprotein: “Envelope glycoprotein from tick-borne encephalitis virus”. X-ray diffraction, 1 ligand (NAG), 2 pockets (best druggability 0.49). MolNFT v1 #22101 on GenesisL1: 3D structure, binding…
- PDB
- 1SVB
- Type
- protein
- Length
- 395 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tick-borne encephalitis virus glycoprotein
- UniProt
- P14336
- Ligands
- NAG
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tick-borne encephalitis virus glycoprotein | protein | 395 | 8% helix, 49% strand | P14336 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.49 | 0.81 | 30 | empty |
| 2 | 76 | 0.29 | 0.72 | 25 | empty |
Modifications
Observed in the structure: 6 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 1SVB · Envelope glycoprotein from tick-borne encephalitis virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14336
- Elsewhere: RCSB PDB 1SVB · PDBe 1SVB · UniProt P14336
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