MolNFT v1 · #21951 · protein
Crystal structure analysis of oligoxyloglucan reducing-end- specific cellobiohydrolase (oxg-rcbh)
1SQJ · Oligoxyloglucan reducing-end-specific cellobiohydrolase: “Crystal structure analysis of oligoxyloglucan reducing-end- specific cellobiohydrolase (oxg-rcbh)”. X-ray diffraction, 15 pockets (best druggability 0.81). MolNFT v1 #21951…
- PDB
- 1SQJ
- Type
- protein
- Length
- 1,541 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligoxyloglucan reducing-end-specific cellobiohydrolase
- EC
- 3.2.1.150
- UniProt
- Q8J0D2
- Pockets
- 15 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oligoxyloglucan reducing-end-specific cellobiohydrolase (EC 3.2.1.150) | protein | 770 | 4% helix, 37% strand | Q8J0D2 |
| B | Oligoxyloglucan reducing-end-specific cellobiohydrolase (EC 3.2.1.150) | protein | 771 | 4% helix, 36% strand | Q8J0D2 |
Pockets
15 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 688 | 0.81 | 0.85 | 46 | empty |
| 2 | 688 | 0.81 | 0.85 | 47 | empty |
| 3 | 317 | 0.73 | 0.86 | 43 | empty |
| 4 | 317 | 0.73 | 0.86 | 47 | empty |
| 5 | 196 | 0.63 | 0.84 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 544 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1SQJ · Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8J0D2 · AlphaFold monomer V2.0 prediction for oligoxyloglucan reducing end- specific… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8J0D2
- Elsewhere: RCSB PDB 1SQJ · PDBe 1SQJ · UniProt Q8J0D2
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