MolNFT v1 · #21941 · protein
Structure of SKI8P, a wd repeat protein involved in mRNA degradation and meiotic recombination
1SQ9 · Antiviral protein SKI8: “Structure of SKI8P, a wd repeat protein involved in mRNA degradation and meiotic recombination”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.79). MolNFT v1 #21941 on GenesisL1: 3D…
- PDB
- 1SQ9
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Antiviral protein SKI8
- UniProt
- Q02793
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Antiviral protein SKI8 | protein | 378 | 4% helix, 52% strand | Q02793 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 615 | 0.79 | 0.85 | 63 | SO4 |
| 2 | 51 | 0.29 | 0.76 | 17 | empty |
Compared structures
- 1SQ9 · Structure of Ski8p, a WD repeat protein involved in mRNA degradation and meiotic… · the same entry in another collection · chain A against A, TM-score 1.00
- Q02793 · AlphaFold monomer V2.0 prediction for antiviral protein SKI8 (Q02793) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q02793
- Elsewhere: RCSB PDB 1SQ9 · PDBe 1SQ9 · UniProt Q02793
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