MolNFT v1 · #21909 · DNA
A DNA duplex containing a cholesterol adduct (alpha-anomer)
1SP6 · 5'-D(*CP*CP*AP*CP*(HOL)P*GP*GP*AP*AP*C)-3': “A DNA duplex containing a cholesterol adduct (alpha-anomer)”. Solution nmr. MolNFT v1 #21909 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1SP6
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*CP*AP*CP*(HOL)P*GP*GP*AP*AP*C)-3'; 5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*CP*AP*CP*(HOL)P*GP*GP*AP*AP*C)-3' | dna | 10 | — | — |
| B | 5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3' | dna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 593 Ų buried · 41 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 1SP6 · A DNA duplex containing a cholesterol adduct (alpha-anomer) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1SP6 · PDBe 1SP6
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