MolNFT v1 · #21744 · protein
Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein ialpha
1SK4 · Peptidoglycan recognition protein I-alpha: “Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein…”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #21744 on GenesisL1: 3D…
- PDB
- 1SK4
- Type
- protein
- Length
- 163 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidoglycan recognition protein I-alpha
- UniProt
- Q96LB9
- Ligands
- NA
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan recognition protein I-alpha | protein | 163 | 29% helix, 20% strand | Q96LB9 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide, 1 modified (disulfide, oxidation).
Compared structures
- 1SK4 · crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan… · the same entry in another collection · chain A against A, TM-score 1.00
- Q96LB9 · AlphaFold monomer V2.0 prediction for peptidoglycan recognition protein 3 (Q96LB9) · a predicted model of the same protein · chain A against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96LB9
- Elsewhere: RCSB PDB 1SK4 · PDBe 1SK4 · UniProt Q96LB9
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