MolNFT v1 · #21706 · protein
The 1.5 a resolution crystal structure of [FE3S4]- ferredoxin from the hyperthermophilic archaeon pyrococcus furiosus
1SJ1: “The 1.5 a resolution crystal structure of [FE3S4]- ferredoxin from the hyperthermophilic archaeon pyrococcus…”. X-ray diffraction, 2 ligands (NCO, F3S). MolNFT v1 #21706 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1SJ1
- Type
- protein
- Length
- 132 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin
- UniProt
- P29603
- Ligands
- NCO, F3S
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ferredoxin | protein | 66 | 27% helix, 26% strand | P29603 |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 4 copies · chains A, B
- F3S · FE3-S4 cluster · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 424 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1SJ1 · The 1.5 A Resolution Crystal Structure of [Fe3S4]-Ferredoxin from the hyperthermophilic… · the same entry in another collection · chain A against A, TM-score 1.00
- P29603 · AlphaFold monomer V2.0 prediction for ferredoxin (P29603) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29603
- Elsewhere: RCSB PDB 1SJ1 · PDBe 1SJ1 · UniProt P29603
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