MolNFT v1 · #21581 · protein
Binding of N,N',N"-triacetylchitotriose to hew lysozyme: a powder diffraction study
1SF6: “Binding of N,N',N"-triacetylchitotriose to hew lysozyme: a powder diffraction study”. Powder diffraction, 1 ligand (NAG), 2 pockets (best druggability 0.80). MolNFT v1 #21581 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1SF6
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- powder diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P00698
- Ligands
- NAG
- Pockets
- 2 · best druggability 0.80
Structure
powder diffraction · 1 distinct chain · 24% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 129 | 24% helix, 6% strand | P00698 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 340 | 0.80 | 0.89 | 49 | empty |
| 2 | 69 | 0.35 | 0.77 | 13 | NAG |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1SF6 · Binding of N,N',N"-triacetylchitotriose to hew lysozyme: a powder diffraction study · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 1SF6 · PDBe 1SF6 · UniProt P00698
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