MolNFT v1 · #21462 · protein

Crystal structure of pseudomonas aeruginosa udp-N-acetylglucosamine 4- epimerase complexed with udp-glucose

1SB9 · Wbpp: “Crystal structure of pseudomonas aeruginosa udp-N-acetylglucosamine 4- epimerase complexed with udp-glucose”. X-ray diffraction, 2 ligands (NAD, UPG), 2 pockets (best druggability 0.84). MolNFT v1 #21462 on GenesisL1: 3D…

PDB: 1SB9
Type: protein
Length: 340 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Wbpp
EC: 5.1.3.7
Ligands: NAD, UPG
Pockets: 2 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Wbpp (EC 5.1.3.7)	protein	340	45% helix, 16% strand	—

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A
UPG · Uridine-5'-diphosphate-glucose · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	870	0.84	0.87	81	NAD, UPG
2	62	0.30	0.75	18	empty

Compared structures

1SB9 · Crystal structure of Pseudomonas aeruginosa UDP-N-acetylglucosamine 4-epimerase complexed… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1SB9 · PDBe 1SB9

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