MolNFT v1 · #21446 · RNA
Crystal structure of the RNA octamer GIC(GA)GCC
1SAQ · 5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3': “Crystal structure of the RNA octamer GIC(GA)GCC”. X-ray diffraction. MolNFT v1 #21446 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1SAQ
- Type
- RNA
- Length
- 40 nucleotides
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | 5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3' | rna | 8 | — | — |
Interfaces
4 interfaces between chains.
- C–D · 464 Ų buried · 44 hydrogen bonds · nucleic-nucleic
- A–B · 458 Ų buried · 47 hydrogen bonds · nucleic-nucleic
- A–E · 91 Ų buried · 0 hydrogen bonds · nucleic-nucleic
- B–E · 58 Ų buried · 2 hydrogen bonds · nucleic-nucleic
Compared structures
- 1SAQ · Crystal Structure of the RNA octamer GIC(GA)GCC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1SAQ · PDBe 1SAQ
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