MolNFT v1 · #21425 · protein
Atomic structure of a putative anaerobic dehydrogenase component
1S9U · Putative component of anaerobic dehydrogenases: “Atomic structure of a putative anaerobic dehydrogenase component”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.48). MolNFT v1 #21425 on GenesisL1: 3D structure…
- PDB
- 1S9U
- Type
- protein
- Length
- 201 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative component of anaerobic dehydrogenases
- UniProt
- Q8ZPK0
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative component of anaerobic dehydrogenases | protein | 201 | 64% helix, 1% strand | Q8ZPK0 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.48 | 0.77 | 22 | PEG |
| 2 | 72 | 0.38 | 0.77 | 15 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 1S9U · Atomic structure of a putative anaerobic dehydrogenase component · the same entry in another collection · chain A against A, TM-score 1.00
- Q8ZPK0 · AlphaFold monomer V2.0 prediction for tat proofreading chaperone dmsd (Q8ZPK0) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZPK0
- Elsewhere: RCSB PDB 1S9U · PDBe 1S9U · UniProt Q8ZPK0
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