MolNFT v1 · #21287 · protein
The structure of B19 parvovirus capsid
1S58: “The structure of B19 parvovirus capsid”. X-ray diffraction, 5 pockets (best druggability 0.60). MolNFT v1 #21287 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1S58
- Type
- protein
- Length
- 523 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- B19 parvovirus capsid
- UniProt
- Q90201
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | B19 parvovirus capsid | protein | 523 | 4% helix, 18% strand | Q90201 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 364 | 0.60 | 0.77 | 42 | empty |
| 2 | 312 | 0.54 | 0.74 | 47 | empty |
| 3 | 98 | 0.34 | 0.73 | 21 | empty |
| 4 | 67 | 0.27 | 0.72 | 16 | empty |
| 5 | 66 | 0.27 | 0.72 | 15 | empty |
Compared structures
- 1S58 · The structure of B19 parvovirus capsid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q90201
- Elsewhere: RCSB PDB 1S58 · PDBe 1S58 · UniProt Q90201
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