MolNFT v1 · #21230 · protein

X-ray crystal structure of yuso protein from bacillus subtilis

1S3J: “X-ray crystal structure of yuso protein from bacillus subtilis”. X-ray diffraction, 2 pockets (best druggability 0.82). MolNFT v1 #21230 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1S3J
Type: protein
Length: 284 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yuso protein
UniProt: O32181
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 73% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Yuso protein	protein	143	73% helix, 9% strand	O32181
B	Yuso protein	protein	141	73% helix, 9% strand	O32181

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1009	0.82	0.82	77	empty
2	167	0.48	0.76	20	empty

Interfaces

1 interface between chains.

A–B · 1954 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 14 modified (engineered).

Compared structures

1S3J · X-ray crystal structure of YusO protein from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
O32181 · AlphaFold monomer V2.0 prediction for uncharacterized hth-type transcriptional regulator… · a predicted model of the same protein · chain B against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O32181
Elsewhere: RCSB PDB 1S3J · PDBe 1S3J · UniProt O32181

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