MolNFT v1 · #21211 · protein
X-ray crystal structure of desulfovibrio vulgaris rubrerythrin with displacement of iron by zinc at the diiron site
1S2Z: “X-ray crystal structure of desulfovibrio vulgaris rubrerythrin with displacement of iron by zinc at the…”. X-ray diffraction, 2 ligands (FE, ZN), 2 pockets (best druggability 0.45). MolNFT v1 #21211 on GenesisL1: 3D structure…
- PDB
- 1S2Z
- Type
- protein
- Length
- 190 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rubrerythrin
- UniProt
- P24931
- Ligands
- FE, ZN
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rubrerythrin | protein | 190 | 59% helix, 11% strand | P24931 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.45 | 0.79 | 21 | empty |
| 2 | 71 | 0.39 | 0.79 | 21 | empty |
Compared structures
- 1S2Z · X-ray crystal structure of Desulfovibrio vulgaris Rubrerythrin with displacement of iron… · the same entry in another collection · chain A against A, TM-score 1.00
- P24931 · AlphaFold monomer V2.0 prediction for rubrerythrin (P24931) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24931
- Elsewhere: RCSB PDB 1S2Z · PDBe 1S2Z · UniProt P24931
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.