MolNFT v1 · #21063 · protein

The crystal structure of a protein of unknown function yfbm from escherichia COLI

1RYL · Hypothetical protein yfbm: “The crystal structure of a protein of unknown function yfbm from escherichia COLI”. X-ray diffraction, 3 pockets (best druggability 0.51). MolNFT v1 #21063 on GenesisL1: 3D structure, binding sites and…

PDB: 1RYL
Type: protein
Length: 306 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein yfbm
UniProt: P76483
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 54% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein yfbm	protein	157	52% helix, 16% strand	P76483
B	Hypothetical protein yfbm	protein	149	55% helix, 15% strand	P76483

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	180	0.51	0.78	30	empty
2	85	0.32	0.73	19	empty
3	55	0.30	0.75	18	empty

Interfaces

1 interface between chains.

A–B · 441 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

1RYL · The Crystal Structure of a Protein of Unknown Function YfbM from Escherichia coli · the same entry in another collection · chain B against B, TM-score 1.00
P76483 · AlphaFold monomer V2.0 prediction for protein yfbm (P76483) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P76483
Elsewhere: RCSB PDB 1RYL · PDBe 1RYL · UniProt P76483

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