MolNFT v1 · #20980 · protein
Crystal structure of the arthrobacter aurescens chondroitin ac lyase
1RW9: “Crystal structure of the arthrobacter aurescens chondroitin ac lyase”. X-ray diffraction, 2 ligands (NA, PO4), 5 pockets (best druggability 0.75). MolNFT v1 #20980 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1RW9
- Type
- protein
- Length
- 754 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chondroitin ac lyase
- EC
- 4.2.2.5
- UniProt
- P84141
- Ligands
- NA, PO4
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chondroitin ac lyase (EC 4.2.2.5) | protein | 754 | 32% helix, 27% strand | P84141 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 928 | 0.75 | 0.78 | 86 | PO4 |
| 2 | 69 | 0.46 | 0.83 | 17 | empty |
| 3 | 67 | 0.37 | 0.78 | 15 | empty |
| 4 | 62 | 0.32 | 0.76 | 15 | empty |
| 5 | 88 | 0.32 | 0.73 | 17 | empty |
Compared structures
- 1RW9 · Crystal structure of the Arthrobacter aurescens chondroitin AC lyase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84141
- Elsewhere: RCSB PDB 1RW9 · PDBe 1RW9 · UniProt P84141
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