MolNFT v1 · #20831 · DNA + RNA

DNA/RNA hybrid duplex containing a purine-rich RNA strand, NMR, 10 structures

1RRD · RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'): “DNA/RNA hybrid duplex containing a purine-rich RNA strand, NMR, 10 structures”. Solution nmr. MolNFT v1 #20831 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1RRD
Type: DNA + RNA
Length: 20 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'); DNA (5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3')

Structure

solution nmr · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (5'-R(GPAPAPGPAPGPAPAPGPC)-3')	rna	10	—	—
B	DNA (5'-D(GPCPTPTPCPTPCPTPTPC)-3')	dna	10	—	—

Interfaces

1 interface between chains.

A–B · 466 Å² buried · 56 hydrogen bonds · nucleic-nucleic

Compared structures

1RRD · DNA/RNA hybrid duplex containing a purine-rich RNA strand, NMR, 10 structures · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1RRD · PDBe 1RRD

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