MolNFT v1 · #20755 · protein

Structure of ssp-19, an msp-domain protein like family member in caenorhabditis elegans

1ROW: “Structure of ssp-19, an msp-domain protein like family member in caenorhabditis elegans”. X-ray diffraction, 2 pockets (best druggability 0.39). MolNFT v1 #20755 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ROW
Type: protein
Length: 214 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Msp-domain protein like family member
UniProt: O01829
Pockets: 2 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Msp-domain protein like family member	protein	107	5% helix, 57% strand	O01829

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	131	0.39	0.74	23	empty
2	56	0.29	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 225 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

1ROW · Structure of SSP-19, an MSP-domain protein like family member in Caenorhabditis elegans · the same entry in another collection · chain A against A, TM-score 1.00
O01829 · AlphaFold monomer V2.0 prediction for sperm-specific class P protein 19 (O01829) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O01829
Elsewhere: RCSB PDB 1ROW · PDBe 1ROW · UniProt O01829

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