MolNFT v1 · #20706 · RNA

Crystallographic structure of an RNA helix: [U(U-A)6A]2

1RNA · RNA (5'-R(*UP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*A)-3'): “Crystallographic structure of an RNA helix: [U(U-A)6A]2”. X-ray diffraction, 1 pocket (best druggability 0.50). MolNFT v1 #20706 on GenesisL1: 3D structure, binding sites…

PDB: 1RNA
Type: RNA
Length: 28 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*UP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*A)-3')
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RNA (5'-R(UPUPAPUPAPUPAPUPAPUPAPUPAPA)-3')	rna	14	—	—

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	313	0.50	0.74	17	empty

Interfaces

1 interface between chains.

A–B · 653 Å² buried · 53 hydrogen bonds · nucleic-nucleic

Compared structures

1RNA · Crystallographic structure of an RNA helix: [U(U-A)6A]2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1RNA · PDBe 1RNA

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