MolNFT v1 · #20629 · protein

Structure of oppa

1RKM · Oligo-peptide binding protein: “Structure of oppa”. X-ray diffraction, 3 pockets (best druggability 0.75). MolNFT v1 #20629 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1RKM
Type: protein
Length: 517 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oligo-peptide binding protein
UniProt: P06202
Pockets: 3 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oligo-peptide binding protein	protein	517	35% helix, 22% strand	P06202

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	871	0.75	0.79	79	empty
2	141	0.56	0.82	29	empty
3	129	0.42	0.76	23	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1RKM · Structure of oppa · the same entry in another collection · chain A against A, TM-score 1.00
P06202 · AlphaFold monomer V2.0 prediction for periplasmic oligopeptide- binding protein (P06202) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06202
Elsewhere: RCSB PDB 1RKM · PDBe 1RKM · UniProt P06202

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