MolNFT v1 · #20592 · protein

Solution structure of a homodimeric hypothetical protein, AT5G22580, a structural genomics target from arabidopsis thaliana

1RJJ · Expressed protein: “Solution structure of a homodimeric hypothetical protein, AT5G22580, a structural genomics target from…”. Solution nmr, 6 pockets (best druggability 0.60). MolNFT v1 #20592 on GenesisL1: 3D structure, binding…

PDB: 1RJJ
Type: protein
Length: 222 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Expressed protein
UniProt: Q9FK81
Pockets: 6 · best druggability 0.60

Structure

solution nmr · 1 distinct chain · 33% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Expressed protein	protein	111	33% helix, 29% strand	Q9FK81

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.60	0.91	23	empty
2	129	0.58	0.83	18	empty
3	251	0.56	0.77	26	empty
4	140	0.54	0.80	22	empty
5	71	0.43	0.80	24	empty

Interfaces

1 interface between chains.

A–B · 1556 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

1RJJ · Solution structure of a homodimeric hypothetical protein, At5g22580, a structural… · the same entry in another collection · chain A against A, TM-score 1.00
Q9FK81 · AlphaFold monomer V2.0 prediction for stress-response A/B barrel domain-containing… · a predicted model of the same protein · chain A against A, TM-score 0.77

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9FK81
Elsewhere: RCSB PDB 1RJJ · PDBe 1RJJ · UniProt Q9FK81

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