MolNFT v1 · #20470 · protein

Rieske soluble fragment from spinach

1RFS · Rieske protein: “Rieske soluble fragment from spinach”. X-ray diffraction, 1 ligand (FES), 1 pocket (best druggability 0.34). MolNFT v1 #20470 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1RFS
Type: protein
Length: 127 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rieske protein
UniProt: P08980
Ligands: FES
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rieske protein	protein	127	8% helix, 36% strand	P08980

Ligands and binding sites

FES · Fe2/s2 (inorganic) cluster · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.34	0.78	18	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1RFS · Rieske soluble fragment from spinach · the same entry in another collection · chain A against A, TM-score 1.00
P08980 · AlphaFold monomer V2.0 prediction for cytochrome B6-F complex iron- sulfur subunit… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08980
Elsewhere: RCSB PDB 1RFS · PDBe 1RFS · UniProt P08980

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